department of biotechnology
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Scientific publications:

       2011, 2010, 2009, 2008, 2007, 2006 



2011

HORTOBÁGYI, Tibor, TROAKES, Claire, NISHIMURA, Agnes L., VANCE, Caroline, SWIETEN, John V. van, SEELAAR, Harro, KING, Andrew, AL-SARRAJ, Safa, ROGELJ, Boris, SHAW, Christopher E. Optineurin inclusions occur in a minority of TDP-43 positive ALS and FTLD-TDP cases and are rarely observed in other neurodegenerative disorders. Acta Neuropathol, 2011, vol. 121, no. 4, str. 519-527.

AL-SARRAJ, Safa, KING, Andrew, TROAKES, Claire, SMITH, Bradley, MAEKAWA, Satomi, BODI, Istvan, ROGELJ, Boris, AL-CHALABI, Ammar, HORTOBÁGYI, Tibor, SHAW, Christopher E. p62 positive, TDP-43 negative, neuronal cytoplasmic and intranuclear inclusions in the cerebellum and hippocampus define the pathology of C9orf72-linked FTLD and MND/ALS. Acta Neuropathol, 2011, vol. 122, no. 6, str. 691-702.

BERLEC, Aleš, ZADRAVEC, Petra, JEVNIKAR, Zala, ŠTRUKELJ, Borut. Identification of candidate carrier proteins for surface display on Lactococcus lactis by theoretical and experimental analyses of the surface proteome. Appl. environ. microbiol., 2011, vol. 77, no. 4, str. 1292-1300.  

POHLEVEN, Jure, BRZIN, Jože, VRABEC, Lara, LEONARDI, Adrijana, ČOKL, Andrej, ŠTRUKELJ, Borut, KOS, Janko, SABOTIČ, Jerica. Basidiomycete Clitocybe nebularis is rich in lectins with insecticidal activities. Appl. microbiol. biotechnol., 2011, vol. 91, no. 4, str. 1141-1148.

SABOTIČ, Jerica, KILARU, Sreedhar, BUDIČ, Maruška, BUH GAŠPARIČ, Meti, GRUDEN, Kristina, BAILEY, Andy, FOSTER, Gary D., KOS, Janko. Protease inhibitors clitocypin and macrocypin are differentially expressed within basidiomycete fruiting bodies. Biochimie (Paris), 2011, vol. 93, no. 10, str. 1685-1693.

BERLEC, Aleš, ŠTRUKELJ, Borut. Generating a custom TA-cloning expresion plasmid for Lactococcus lactis. BioTechniques, 3 str., doi: 10.2144/000113800.

OBERMAJER, Nataša, MUTHUSWAMY, Ravikumar, LESNOCK, Jamie, EDWARDS, Robert P., KALINSKI, Pawel. Positive feedback between PGE2 and COX2 redirects the differentiation of human dendritic cells towards stable myeloid-derived suppressor cells. Blood, 2011, vol. 118, no. 20, str. 5498-5505.

PODPEČAN, Vid, LAVRAČ, Nada, MOZETIČ, Igor, KRALJ NOVAK, Petra, TRAJKOVSKI, Igor, LANGOHR, Laura, KULOVESI, Kimmo, TOIVONEN, Hannu, PETEK, Marko, MOTALN, Helena, GRUDEN, Kristina. SegMine workflows for semantic microarray data analysis in Orange4WS. BMC bioinformatics, 2011, vol. 12, no. 416, str. 416-1-416-16.

OBERMAJER, Nataša, MUTHUSWAMY, Ravikumar, ODUNSI, Kunle O., EDWARDS, Robert P., KALINSKI, Pawel. PGE2-dependent CXCL12 production and CXCR4 expression control the accumulation of human MDSCs in ovarian cancer environment. Cancer res. (Baltimore), 2011, vol. , no. , str., .

MIRKOVIĆ, Bojana, RENKO, Miha, TURK, Samo, SOSIČ, Izidor, JEVNIKAR, Zala, OBERMAJER, Nataša, TURK, Dušan, GOBEC, Stanislav, KOS, Janko. Novel mechanism of cathepsin B inhibition by antibiotic nitroxoline and related compounds. ChemMedChem. [Print ed.], 2011, vol. 6, iss. 8, str. 1351-1356.

PERŠE, Martina, INJAC, Rade, DJORDJEVIĆ, Aleksandar, ŠTRUKELJ, Borut, CERAR, Anton. Protective effect of fullerenol nano particles on colon cancer development in dimethylhydrazine rat model. Digest J. Nanomater. Biostruct., 2011, vol. 6, no. 4, str. 1543-1551.

GOPAL, Radha, LIN, Yinyao, OBERMAJER, Nataša, SLIGHT, Samantha, NUTHALAPATI, Nikhil, AHMED, Mushtaq, KALINSKI, Pawel, KHADER, Shabaana A. IL-23 dependent IL-17 drives Th1-cell responses following Mycobacterium bovis BCG vaccination. Eur J Immunol, 2011, vol. , no. , str., ilustr. doi: 10.1002/eji.201141569.  

SOSIČ, Izidor, MIRKOVIĆ, Bojana, TURK, Samo, ŠTEFANE, Bogdan, KOS, Janko, GOBEC, Stanislav. Discovery and kinetic evaluation of 6-substituted 4-benzylthio-1,3,5- triazin-2(1H)-ones as inhibitors of cathepsin B. Eur. j. med. chem.. [Print ed.], 2011, vol. 46, iss. 9, str. 4648-4656

TOLLERVEY, James R., WANG, Zhen, HORTOBÁGYI, Tibor, WITTEN, Joshua T., ZARNACK, Kathi, KAYIKCI, Melis, CLARK, Tyson, SCHWEITZER, Anthony C., ROT, Gregor, CURK, Tomaž, ZUPAN, Blaž, ROGELJ, Boris, SHAW, Christopher E., ULE, Jernej. Analysis of alternative splicing associated with aging and neurodegeneration in the human brain. Genome res., Oct. 2011, vol. 21, no. 10, str. 1572-1582.

ŠVAJGER, Urban, POHLEVEN, Jure, KOS, Janko, ŠTRUKELJ, Borut, JERAS, Matjaž. CNL, a ricin B-like lectin from mushroom Clitocybe nebularis, induces maturation and activation of dendritic cells via toll-like receptor 4 pathway. Immunology (Oxf., Online), 2011, vol. 134, no. 4, str. 409-418. 

JEVNIKAR, Zala, OBERMAJER, Nataša, KOS, Janko. LFA-1 fine-tuning by cathepsin X. IUBMB life, 2011, vol. 63, no. 9, str. 686-693.

COLBERT, Jeff D., MATTHEWS, Stephen P., KOS, Janko, WATTS, Colin. Internalization of exogenous cystatin F supresses cysteine proteases and induces the accumulation of single-chain cathepsin L by multiple mechanisms. J Biol Chem, 2011, vol. 286, no. 49, str. 42082-42090.

ŠVAJGER, Urban, OBERMAJER, Nataša, ANDERLUH, Marko, KOS, Janko, JERAS, Matjaž. DC-SIGN ligation greatly affects dendritic cell differentiation from monocytescompromising their normal function. J. leukoc. biol., 2011, vol. 89, no. 6, str. 893-905.

JEVNIKAR, Zala, OBERMAJER, Nataša, DOLJAK, Bojan, TURK, Samo, GOBEC, Stanislav, ŠVAJGER, Urban, HAILFINGER, Stephan, THOME, Margot, KOS, Janko. Cathepsin X cleavage of the ß2 integrin regulates talin-binding and LFA-1 affinity in T cells. J. leukoc. biol., 2011, vol. 90, no. 1, str. 99-109.  

SOFTIĆ, Adaleta, BEGIĆ, Lejla, HALIBAŠIĆ, Alma, KOS, Janko. Cystatin C in sera of patients with aggressive non-Hodgkin B-cell lymphoma. Med. glas. Ljek. komore Zeničko-doboj. kantona, 2011, vol. 8, no. 1, str. 97-100.

CIZELJ, Ivanka, BERČIČ, Rebeka Lucijana, DUŠANIĆ, Daliborka, NARAT, Mojca, KOS, Janko, DOVČ, Peter, BENČINA, Dušan. Mycoplasma gallisepticum and Mycoplasma synoviae express a cysteine protease CysP, which can cleave chicken IgG into Fab and Fc. Microbiol (Soc. Gen. Microbiol.), 2011, vol. 157, no. 2, str. 362-372.

OBERMAJER, Nataša, SATTIN, Sara, COLOMBO, Cinzia, BRUNO, Michela, ŠVAJGER, Urban, ANDERLUH, Marko, BERNARDI, Anna. Design, synthesis and activity evaluation of mannose-based DC-SIGN antagonists. Molecular diversity, 2011, vol. 15, no. 2, str.347-360.

BLEULER-MARTINEZ, Silvia, BUTSCHI, A., GARBANI, M., WÄLTI, M. A., WOHLSCHLAGER, T., POTTHOFF, E., SABOTIČ, Jerica, POHLEVEN, Jure, LÜTHY, P., HENGARTNER, M. O., AEBI, Markus, KÜNZLER, Markus. A lectin-mediated resistance of higher fungi against predators and parasites. Mol. ecol., 2011, vol. 20, no. 14, str. 3056-3070

MOLEK, Peter, ŠTRUKELJ, Borut, BRATKOVIČ, Tomaž. Peptide phage display as a tool for drug discovery: targeting membrane receptors. Molecules (Basel), 2011, vol. 16, no. 1, str. 857-887.  

SEGAT, Daniela, TAVANO, Regina, DONINI, Marta, RIO-ECHEVARRIA, Iria, ROJNIK, Matija, KOCBEK, Petra, KOS, Janko, IRATNI, Selma, SCHEGELMANN, Dietrich, MANCIN, Fabrizio, DUSI, Stefano, PAPINI, Emanuele. Proinflammatory effects of bare and PEGylated ORMOSIL-, PLGA- and SUV-NPs on monocytes and PMNs and their modulation by f-MLP. Nanomedicine (Lond., Print), 2011, vol. 6, no. 6, str. 1027-1046.  

TOLLERVEY, James R., CURK, Tomaž, ROGELJ, Boris, BRIESE, Michael, CEREDA, Matteo, KAYIKCI, Melis, KÖNIG, Julian, HORTOBÁGYI, Tibor, NISHIMURA, Agnes L., ŽUPUNSKI, Vera, PATANI, Rickie, CHANDRAN, Siddharthan, ROT, Gregor, ZUPAN, Blaž, SHAW, Christopher E., ULE, Jernej. Characterizing the RNA targets and position - dependent splicing regulation by TDP-43. Nat Neurosci, April 2011, vol. 14, no. 4, str. 452-459.

MIRKOVIĆ, Bojana, SOSIČ, Izidor, GOBEC, Stanislav, KOS, Janko. Redox-based inactivation of cysteine cathepsins by compounds containing the 4-aminophenol moiety. PLoS one, 2011, no. 11, art. no. e27197, str. 1-11.

ROJNIK, Matija, JEVNIKAR, Zala, MIRKOVIĆ, Bojana, JANEŠ, Damjan, ZIDAR, Nace, KIKELJ, Danijel, KOS, Janko. Cathepsin H indirectly regulates morphogenetic protein-4 (BMP-4) in various human cell lines. Radiol. oncol. (Ljubl.), 2011, vol. 45, no. 4, str. 259-266.  

BRATKOVIČ, Tomaž, ROGELJ, Boris. Biology and applications of small nucleolar RNAs. Cell Mol Life Sci (Print. ed.), 2011, vol. 68, no. 23, str. 3843-3451.

VODNIK, Miha, ŽAGER, Urška, ŠTRUKELJ, Borut, LUNDER, Mojca. Phage display: selecting straws instead of a needle from a haystack. Molecules (Basel), 2011, vol. 16, iss. 1, str. 790-817.

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2010

PAPAZOVA, Nina, ZHANG, David, GRUDEN, Kristina, VOJVODA, Jana, YANG, Litao, BUH GAŠPARIČ, Meti, BLEJEC, Andrej, FOUILLOUX, Stephane, DE LOOSE, Marc, TAVERNIERS, Isabel. Evaluation of the reliability of maize reference assays for GMO quantification. Anal. bioanal. chem., 2010, vol. 396, no. 6, str. 2189-2201.

DOBNIK, David, MORISSET, Dany, GRUDEN, Kristina. NAIMA as a solution for future GMO diagnostics challenges. Anal. bioanal. chem., 2010, vol. 396, no. 6, str. 2229-2233.

OBERMAJER, Nataša, ŠVAJGER, Urban, JERAS, Matjaž, SATTIN, Sara, BERNARDI, Anna, ANDERLUH, Marko. An assay for functional dendritic cell-specific ICAM-3-grabbing nonintegrin (DC-SIGN) inhibitors of human dendritic cell adhesion. Anal. biochem., 2010, vol. 406, str. 222-229.

RAVNIKAR, Matjaž, ŠTRUKELJ, Borut, OBERMAJER, Nataša, LUNDER, Mojca, BERLEC, Aleš. Engineered lactic acid bacterium Lactococcus lactis capable of binding antibodies and tumor necrosis factor alpha. Appl. environ. microbiol., 2010, vol. 76, no. 20, str. 6928-6932.

PETEK, Marko, BAEBLER, Špela, KUZMAN, Drago, ROTTER, Ana, PODLESEK, Zdravko, GRUDEN, Kristina, RAVNIKAR, Maja, URLEB, Uroš. Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome : modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation. BMC Microbiol, 2010, vol. 10, no. 159, 28, [7] str.

NISHIMURA, Agnes L., ŽUPUNSKI, Vera, ROGELJ, Boris. Nuclear import impairment causes cytoplasmic trans-activation response DNA-binding protein accumulation and is associated with frontotemporal lobar degeneration. Brain, 2010, issue 6, vol. 133, str. 1763-1771.

OBERMAJER, Nataša, DOLJAK, Bojan, POHLEVEN, Jure, KOS, Janko. A dodecapeptide deduced from cytokeratin sequence strongly enhances uPA/tPA-mediated plasminogen activation. Br. J. Haematol., 2010, issue 1, vol. 150, str. 121-124.

JŘRGENSEN, Iben, KOS, Janko, KRAŠOVEC, Marta, TROELSEN, Lone, KLARLUND, Mette, JENSEN, Trine W., HANSEN, Michael S., JACOBSEN, Sřren. Serum cysteine proteases and their inhibitors in rheumatoid arthritis: relation to disease activity and radiographic progression. Clin. rheumatol., 2010, vol. , no. , str.

KOLWIJCK, Eva, OBERMAJER, Nataša, KOS, Janko, SPAN, Paul, THOMAS, Chris M.G., MASSUGER, Leon F.A.G, SWEEP, Fred. The balance between extracellular cathepsins and cystatin C is of importance for ovarian cancer. Eur. j. clin. investig. (Print), 2010, issue 7, vol. 40, str. 591-599.

PAŠKULIN, Roman, JAMNIK, Polona, OBERMAJER, Nataša, SLAVIĆ, Marija, ŠTRUKELJ, Borut. Induction of energy metabolism related enzymes in yeast Saccharomyces cerevisiae exposed to ibogaine is adaptation to acute decrease in ATP energy pool. Eur. J. Pharmacol.. [Print ed.], 2010, vol. 627, no. 1/3, str. 131-135.

ŠVAJGER, Urban, OBERMAJER, Nataša, JERAS, Matjaž. Dendritic cells treated with resveratrol during differentiation from monocytesgain substantial tolerogenic properties upon activation. Immunology (Oxf.), 2010, issue 4, vol. 129, str.525-535.

RADIĆ, Nataša, JEVNIKAR, Zala, OBERMAJER, Nataša, KRISTL, Jernej, KOS, Janko, POHLEVEN, Franc, ŠTRUKELJ, Borut. Infuence of culinary-medicinal maitake mushroom, grifola frondosa (dicks.: fr.) s.f. gray (aphyllophoromycetideae) polysaccharides on gene expression in jurkat t lymphocytes. Int. j. medic. mushrooms, 2010, vol. 12, iss. 3, str. 245-255.

MITCHELL, Jacqueline C., PERKINTON, Michael S., YATES, Darran M., LAU, Kwok-Fai, ROGELJ, Boris, MILLER, C. C., MCLOUGHLIN, Declan M. Expression of the neuronal adaptor protein X11[alpha] protects against memory dysfunction in a transgenic mouse model of Alzheimer's disease. J. Alzheimer's dis., 2010, vol. 20, no. 1, str. 31-36.

RENKO, Miha, SABOTIČ, Jerica, MIHELIČ, Marko, BRZIN, Jože, KOS, Janko, TURK, Dušan. Versatile loops in mycocypins inhibit three protease families. J Biol Chem, 2010, vol. 285, no. 1, str. 308-316.

KOLWIJCK, Eva, MASSUGER, Leon F.A.G, THOMAS, Chris M.G., SPAN, Paul, KRAŠOVEC, Marta, KOS, Janko, SWEEP, Fred. Cathepsins B, L and cystatin C in cyst fluid of ovarian tumors. J Cancer Res Clin Oncol, 2010, vol. 136, no. 5, str. 771-778.

ČEPIN, Urška, GUTIERREZ-AGUIRRE, Ion, BALAŽIC, Leonida, POMPE NOVAK, Maruša, GRUDEN, Kristina, RAVNIKAR, Maja. A one-step reverse transcription real-time PCR assay for the detection and quantitation of Grapevine fanleaf virus. J. virol. methods. [Print ed.], 2010, 10 str., [in press].

NIKOLIĆ, Petra, MEHLE, Nataša, GRUDEN, Kristina, RAVNIKAR, Maja, DERMASTIA, Marina. A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group. Mol. cell. probes, 2010, vol. 24, str. 303-309.

OBERMAJER, Nataša, SATTIN, Sara, COLOMBO, Cinzia, BRUNO, Michela, ŠVAJGER, Urban, ANDERLUH, Marko, BERNARDI, Anna. Design, synthesis and activity evaluation of mannose-based DC-SIGN antagonists. Molecular diversity, 2010, vol. , no. , str.

TAVANO, Regina, SEGAT, Daniela, REDDI, Elena, KOS, Janko, ROJNIK, Matija, KOCBEK, Petra, IRATNI, Selma, SCHEGLMANN, Dietrich, COLUCCI, Mario, RIO ECHEVARRIA, Iria Maria, SELVESTREL, Francesco, MANCIN, Fabrizio, PAPINI, Emanuele. Procoagulant properties of bare and highly PEGylated vinyl-modified silica nanoparticles. Nanomedicine (Lond., Print), 2010, vol. 5, no. 6, str. 881-896.

ROTTER, Ana, KRALJ NOVAK, Petra, BAEBLER, Špela, TOPLAK, Nataša, BLEJEC, Andrej, LAVRAČ, Nada, GRUDEN, Kristina. Gene expression data analysis using closed itemset mining for labeled data. Omics (Larchmt. N.Y.), 2010, vol. 14, no. 2, str. 177-186.

KOGOVŠEK, Polona, POMPE NOVAK, Maruša, BAEBLER, Špela, ROTTER, Ana, GOW, Lisa, GRUDEN, Kristina, FOSTER, Gary D., BOONHAM, Neil, RAVNIKAR, Maja. Aggressive and mild Potato virus Y isolates trigger different specific responses in susceptible potato plants. Plant Pathol., 2010, vol. 59, issue 6, str. 1121-1132.

ZORIČ PETERNEL, Metoda, ČANŽEK MAJHENIČ, Andreja, HOLO, Helge, NES, Ingolf, SALEHIAN, Zhian, BERLEC, Aleš, ROGELJ, Irena. Wide-inhibitory spectra bacteriocins produced by Lactobacillus gasseri K7. Probiot. antimicrob. proteins (Print), 2010, on line.

BUH GAŠPARIČ, Meti, TENGS, Torstein, LA PAZ, Jose Luiz, HOLST-JENSEN, Arne, PLA, Maria, ESTEVE, Teresa, ŽEL, Jana, GRUDEN, Kristina. Comparison of nine different real-time PCR chemistries for qualitative and quantitative applications in GMO detection. Anal. bioanal. chem., 2010, vol. 396, no. 6, str. 2023-2029.

ŠVAJGER, Urban, ANDERLUH, Marko, JERAS, Matjaž, OBERMAJER, Nataša. C-type lectin DC-SIGN; an adhesion, signalling and antigen-uptake molecule that guides dendritic cells in immunity. Cell. signal., 2010, vol. 22, iss. 10, str. 1397-1405.

HAFNER, Anja, OBERMAJER, Nataša, KOS, Janko. Gamma-1-syntrophin mediates trafficking of gamma-enolase towards the plasma membrane and enhances its neurotrophic activity. NeuroSignals (Print), 2010, vol. 18, no. 4, str. 246-258.

ŠVAJGER, Urban, OBERMAJER, Nataša, JERAS, Matjaž. Novel findings in drug-induced dendritic cell tolerogenicity. Int. rev. immunol. (Print), 2010, vol. 29, no. 6, str. 574-607.

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2009

PEČAR FONOVIĆ, Urša, KOS, Janko. Efficient removal of cathepsin L from active cathepsin X using immunoprecipitation technique. Acta chim. slov.. [Tiskana izd.], 2009, vol. 56, no. 4, str. 985-988

DOBNIK, David, MORISSET, Dany, GRUDEN, Kristina. NAIMA as a solution for future GMO diagnostics challenges. Anal. bioanal. chem., 2009, 5 str, [in press].

RAVNIKAR, Matjaž, IRMAN, Andreja, RADIĆ, Nataša, LUNDER, Mojca, ŠTRUKELJ, Borut. Chemoporation using saponins or cholates: an alternative method for transformation of bacterial. Biotechnol. lett., 2009, iss. 12, vol. 31, str.1943-1946.

INJAC, Rade, KOČEVAR GLAVAČ, Nina, ŠTRUKELJ, Borut. Optimized method for determination of amoxicillin, ampicillin, sulfamethoxazole, and sulfacetamide in animal feed by micellar electrokinetic capillary chromatography and comparison with high-performance liquid chromatography. Croat. chem. acta, 2009, iss. 3, vol. 82, str. 685-694,

SABOTIČ, Jerica, POPOVIČ, Tatjana, BRZIN, Jože. Aspartic proteases from basidiomycete Clitocybe nebularis. Croat. chem. acta, 2009, vol. 82, no. 4, str. 739-745.

ŠVAJGER, Urban, OBERMAJER, Nataša, JERAS, Matjaž. Dendritic cells treated with resveratrol during differentiation from monocytesgain substantial tolerogenic properties upon activation. Immunology (Oxf.), 2009, vol. , no. , str.

OBERMAJER, Nataša, DOLJAK, Bojan, KOS, Janko. Cytokeratin 8 ectoplasmic domain binds urokinase-type plasminogen activator to breast tumor cells and modulates their adhesion, growth and invasiveness. Mol Cancer, 2009, vol. 8, no. 88, 31 str.

PERŠE, Martina, INJAC, Rade, ŠTRUKELJ, Borut, CERAR, Anton. Effects of high-fat mixed-lipid diet and exercise on the antioxidant system inskeletal and cardiac muscles of rats with colon carcinoma. Pharmacol. Rep., 2009, vol. 61, no. 5, str. 909-916

SAVIĆ, Bojana, TOMIĆ, Sanja, MAGNUS, Volker, GRUDEN, Kristina, BARLE, Katja, GRENKOVIĆ, Renata, LUDWIG-MÜLLER, Jutta, SALOPEK-SONDI, Branka. Auxin amidohydrolases from Brassica rapa Cleave the alanine conjugate of indolepropionic acid as a preferable substrate : a biochemical and modeling approach. Plant Cell Physiol., 2009, vol. 50, no. 9, str. 1587-1599. 

KOS, Janko, JEVNIKAR, Zala, OBERMAJER, Nataša. The role of cathepsin X in cell signalling. Cell adh. migr., 2009, vol. 3, no. 2, str. 1-3.

BUDIČ, Maruška, KIDRIČ, Marjetka, MEGLIČ, Vladimir, CIGIĆ, Blaž. A quantitative technique for determining proteases and their substrate specificity and pH optima in crude enzyme extracts. Anal. biochem., 2009, issue 1, vol. 388, str. 56-62.

GASER, Dominik, ŠTRUKELJ, Borut, BRATKOVIČ, Tomaž, KREFT, Samo, PUNGERČAR, Jože, LUNDER, Mojca. Cross-affinity of peptide ligands selected from phage display library against pancreatic phospholipase A2 and ammodytoxin C. Acta chim. slov.. [Tiskana izd.], 2009, vol. 56, no. 3, str. 712-717.

COLIN, Carole, VOUTSINOS-PORCHE, Brigitte, NANNI, Isabelle, FINA, Frédéric, METELLUS, Philipe, INTAGLIATA, Dominique, BAEZA, Nathalie, BOUVIER, Corinne, DELFINO, Christine, LOUNDOU, Anderson, CHINOT, Olivier, LAH TURNŠEK, Tamara, KOS, Janko, MARTIN, Pierre-Marie, OUAFIK, L'Houcine, FIGARELLA-BRANGER, Dominique. High expression of cathepsin B and plasminogen activator inhibitor type-1 are strong predictors of survival in glioblastomas. Acta Neuropathol, 2009, vol. , no. , 10 str.

BARKER, Hugh, MCGEACHY, Kara D., TOPLAK, Nataša, GRUDEN, Kristina, ŽEL, Jana, BROWNING, Isla. Comparison of genome sequence of PVY isolates with biological properties. American journal of potato research, 2009, issue 3, vol. 86, str. 227-238.

KRAMER, Mateja, OBERMAJER, Nataša, BOGOVIČ MATIJAŠIĆ, Bojana, ROGELJ, Irena, KMETEC, Vojko. Quantification of live and dead probiotic bacteria in lyophilised product by real-time PCR and by flow cytometry. Appl. microbiol. biotechnol., 2009, no. 6, vol. 84, str. 1137-1147.

POHLEVEN, Jure, OBERMAJER, Nataša, SABOTIČ, Jerica, ANŽLOVAR, Sabina, SEPČIĆ, Kristina, KOS, Janko, KRALJ, Bogdan, ŠTRUKELJ, Borut, BRZIN, Jože. Purification, characterization and cloning of a ricin B-like lectin from mushroom Clitocybe nebularis with antiproliferative activity against human leukemic T cells. Biochim. biophys. acta (G). [Print ed.], 2009, vol. 1790, no. 3, str. 173-181.

INJAC, Rade, PERŠE, Martina, ČERNE, Manica, POTOČNIK, Nejka, RADIĆ, Nataša, GOVEDARICA, Biljana, DJORDJEVIĆ, Aleksandar, CERAR, Anton, ŠTRUKELJ, Borut. Protective effects of fullerenol C60(OH)24 against doxorubicin-induced cardiotoxicity and hepatotoxicity in rats with colorectal cancer. Biomaterials. [Print ed.], 2009, vol. 30, no. 6, str. 1184-1196.

HREN, Matjaž, NIKOLIĆ, Petra, ROTTER, Ana, BLEJEC, Andrej, TERRIER, Nancy, RAVNIKAR, Maja, DERMASTIA, Marina, GRUDEN, Kristina. 'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine. BMC Genomics, 2009, vol. 10, no. 460, 38 str.

ROTTER, Ana, HREN, Matjaž, GRUDEN, Kristina. Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata : extending MapMan ontology for grapevine. BMC plant biol. (Online), 2009, vol. 9, no. 104, str. 1-14.

JEVNIKAR, Zala, OBERMAJER, Nataša, KOS, Janko. Cysteine protease-mediated cytoskeleton interactions with LFA-1 promote T-cellmorphological changes. Cell Motil Cytoskeleton, 2009, vol. , no. , str.,

OBERMAJER, Nataša, JEVNIKAR, Zala, DOLJAK, Bojan, SADAGHIANI, A. M., BOGYO, Matthew, KOS, Janko. Cathepsin X-mediated ß2 integrin activation results in nanotube outgrowth. Cell Mol Life Sci (Print. ed.), 2009, no. 6, vol. 66, str. 1126-1134.

NIGOVIĆ, Biljana, DAMIĆ, Miranda, INJAC, Rade, KOČEVAR GLAVAČ, Nina, ŠTRUKELJ, Borut. Analysis of atorvastatin and related substances by MEKC. Chromatographia, 2009, vol. 69, no. 11-12, str. 1299-1305.

OBERMAJER, Nataša, MAGISTER, Špela, KOPITAR, Andreja Nataša, TEPEŠ, Bojan, IHAN, Alojz, KOS, Janko. Cathepsin X prevents an effective immune response against Helicobacter pylori infection. Eur. j. cell biol., 2009, vol. 88, no. 8, str. 461-471.

JEVNIKAR, Zala, OBERMAJER, Nataša, PEČAR FONOVIĆ, Urša, KARAOGLANOVIC-CARMONA, Adriana, KOS, Janko. Cathepsin X cleaves the ß2 cytoplasmic tail of LFA-1 inducing the intermediate affinity form of LFA-1 and [alpha]-actinin-1 binding. Eur J Immunol, 2009, vol. , no. , 11 str.

SABOTIČ, Jerica, POPOVIČ, Tatjana, PUIZDAR, Vida, BRZIN, Jože. Macrocypins, a family of cysteine protease inhibitors from the basidiomycete Macrolepiota procera. FEBS journal, 2009, vol. 276, no. 16, str. 4334-4345.

MIRKOVIĆ, Bojana, PREMZL, Aleš, HODNIK, Vesna, DOLJAK, Bojan, JEVNIKAR, Zala, ANDERLUH, Gregor, KOS, Janko. Regulation of cathepsin B activity by 2A2 monoclonal antibody. FEBS journal, 2009, vol. 276, no. 17, str. 4739-4751.

INJAC, Rade, RADIĆ, Nataša, GOVEDARICA, Biljana, ĐORĐEVIĆ, Aleksandar, ŠTRUKELJ, Borut. Ispitivanje kardio- i hepato-protektivnosti fulerenola C60(OH)24 in vivo u hroničnoj doksorubicinskoj terapiji kolorektalnih tumora kod pacova = Protective effects of fullerenol against chronic doxorubicin-induced cardiotoxicity and hepatotoxicity in rats with colorectal cancer. Hem. ind., 2009, vol. 63, no. 3, str. 259-268,

MITCHELL, Jacqueline C., ROGELJ, Boris. X11 [Beta] rescues memory and long-term potentiation deficits in Alzheimer's disease APPswe Tg2576 mice. Hum Mol Genet, [in press] 2009, 3 str.,

OBERMAJER, Nataša, DOLJAK, Bojan, JAMNIK, Polona, PEČAR FONOVIĆ, Urša, KOS, Janko. Cathepsin X cleaves the C-terminal dipeptide of alpha- and gamma- enolase and impairs survival and neuritogenesis of neuronal cells. Int J Biochem Cell Biol, 2009, no. 8-9, vol. 41, str. 1685-1696

BUNAKOVA, Karin, OBERMAJER, Nataša, KOTZYA, Jaromir, PESEK, Milos, KOS, Janko. Levels of cathepsins S and H in pleural fluids of inflammatory and neoplastic origin. Int. j. biol. markers, 2009, vol. 24, no. 1, str. 47-51.

RADIĆ, Nataša, INJAC, Rade, ŠTRUKELJ, Borut. Sulphur tuft culinary-medicinal mushroom, Laetiporus sulphureus (Bull.: Fr.) Murrill (Aphyllophoromycetideae): bioactive compounds and pharmaceutical effects (review). Int. j. medic. mushrooms, 2009, vol. 11, no. 2, str. 103-116.

KOS, Janko, OBERMAJER, Nataša, DOLJAK, Bojan, KOCBEK, Petra, KRISTL, Julijana. Inactivation of harmful tumour-associated proteolysis by nanoparticulate system. Int. j. pharm.. [Print ed.], 2009, vol. 381, no. 2, str. 106-112.

VAN DIJK, Jeroen P., CANKAR, Katarina, SCHEFFER, Stanley J., BEENEN, Henriek G., SHEPHERD, Louise V. T., STEWART, Derek, DAVIES, Howard V., WILKOCKSON, Steve J., LEIFERT, Carlo, GRUDEN, Kristina, KOK, Esther. Transcriptome analysis of potato tubers - Effects of different agricultural practices. J. agric. food chem., 2009, letn. 57, str. 1612-1623.

GUTIERREZ-AGUIRRE, Ion, MEHLE, Nataša, DELIĆ, Duška, GRUDEN, Kristina, MUMFORD, Rick, RAVNIKAR, Maja. Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus. J. virol. methods. [Print ed.], 2009, 9 str., [in press].

BERLEC, Aleš, ŠTRUKELJ, Borut. Large increase in brazzein expression achieved by changing the plasmid /strain combination of the NICE system in Lactococcus lactis. Lett. appl. microbiol., 2009, vol. 48, no. 6, str. 750-755.

AVANZO, Petra, SABOTIČ, Jerica, ANŽLOVAR, Sabina, POPOVIČ, Tatjana, LEONARDI, Adrijana, PAIN, Roger H., KOS, Janko, BRZIN, Jože. Trypsin-specific inhibitors from basidiomycete Clitocybe nebularis with regulatory and defensive functions. Microbiol (Soc. Gen. Microbiol.), 2009, vol. 155, no. 12, str. 3971-3981.

BAEBLER, Špela, KREČIČ STRES, Hana, ROTTER, Ana, KOGOVŠEK, Polona, CANKAR, Katarina, KOK, Esther, GRUDEN, Kristina, KOVAČ, Maja, ŽEL, Jana, POMPE NOVAK, Maruša, RAVNIKAR, Maja. PVY[supra]NTN elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation. Mol. plant pathol., 2009, vol. 10, no. 2, str. 263-275

MORISSET, Dany, DEMŠAR, Tina, GRUDEN, Kristina, VOJVODA, Jana, ŠTEBIH, Dejan, ŽEL, Jana. Detection of genetically modified organisms-closing the gaps : to the editor. Nat. biotechnol., 2009, vol. 27, no. 8, 9 str.

PERŠE, Martina, CERAR, Anton, INJAC, Rade, ŠTRUKELJ, Borut. N-methylnitrosourea induced breast cancer in rat, the histopathology of the resulting tumours as a model. Pathol. oncol. res., 2009, vol. 15, no. 1, str. 115-121.

INJAC, Rade, RADIĆ, Nataša, GOVEDARICA, Biljana, PERŠE, Martina, CERAR, Anton, DJORDJEVIĆ, Aleksandar, ŠTRUKELJ, Borut. Acute doxorubicin pulmotoxicity in rats with malignant neoplasm is effectivelytreated with fullerenol C60(OH)24 through inhibition of oxidative stress. Pharmacol. Rep., 2009, no. 2, vol. 61, str. 335-342.

SLANC, Petra, DOLJAK, Bojan, KREFT, Samo, LUNDER, Mojca, JANEŠ, Damjan, ŠTRUKELJ, Borut. Screening of selected food and medicinal plant extracts for pancreatic lipase inhibition. PTR, Phytother. res., 2009, vol. 23, no. 6, str. 874-877.

HREN, Matjaž, RAVNIKAR, Maja, BRZIN, Jernej, ERMACORA, Paolo, CARRARO, Luigi, BIANCO, P.A., CASATI, P., BORGO, M., ANGELINI, E., ROTTER, Ana, GRUDEN, Kristina. Induced expression of sucrose synthase and alcohol dehydrogenase I genes in phytoplasma-infected grapevine plants grown in the field. Plant Pathol., 2009, vol. 58, str. 170-180.

VANCE, Caroline, ROGELJ, Boris. Mutations in FUS, an RNA processing protein, cause familial amyotrophic lateral sclerosis Type 6. Science (Wash. D.C.), 2009, vol. 323, no. 5918, str. 1208-1211.

DJORDJEVIĆ MILIĆ, Vukosava, STANKOV, Karmen, INJAC, Rade, DJORDJEVIĆ, Aleksandar, SRDJENOVIĆ, Branislava, GOVEDARICA, Biljana, RADIĆ, Nataša, DRAGOJEVIĆ SIMIĆ, Viktorija, ŠTRUKELJ, Borut. Activity of antioxidative enzymes in erythrocytes after single dose administration of doxorubicin in rats pretreated by fullerenol C60(OH)24. Toxicol. mech. methods, 2009, vol. 19, no. 1, str. 24-28


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2008

LEJUNE, A, PAIN, RH, CHARLIER, P, FRERE, JM, MATAGNE, A. TEM-1 beta-lactamase folds in a nonhierarchical manner with transient non-native interactions involving the C-terminal region. Biochemistry. 2008, vol. 47(4), str. 1186-93. 

KAVAR, Tatjana, MARAS, Marko, KIDRIČ, Marjetka, ŠUŠTAR VOZLIČ, Jelka, MEGLIČ, Vladimir. Identification of genes involved in the response of leaves of Phaseolus vulgaris to drought stress. Mol. breed.. [Tiskana izd.], 2008, vol. 21, str. 159-172.

LUNDER, Mojca, BRATKOVIČ, Tomaž, ANDERLUH, Gregor, ŠTRUKELJ, Borut, KREFT, Samo. Affinity ranking of phage-displayed peptides: enzyme-linked immunosorbent assay versus surface plasmon resonance. Acta chim. slov.. [Tiskana izd.], 2008, vol. 55, no. 1, str. 233-235.

CANKAR, Katarina, CHAUVENSY-ANCEL, Valerie, FORTABAT, Marie-Noelle, GRUDEN, Kristina, KOBILINSKY, André, ŽEL, Jana, BERTHEAU, Yves. Detection of non-authorized genetically modified organisms using differential quantitative polymerase chain reaction: application to 35S in maize. Anal. biochem., 2008, vol. 376, no. 2, str. 189-199.

INJAC, Rade, PERŠE, Martina, OBERMAJER, Nataša, DJORDJEVIĆ -MILIĆ, Vukosava, PRIJATELJ, Matevž, DJORDJEVIĆ, Aleksandar, CERAR, Anton, ŠTRUKELJ, Borut. Potential hepatoprotective effects of fullerenol C60(OH)24 in doxorubicin-induced hepatotoxicity in rats with mammary carcinomas. Biomaterials. [Print ed.], 2008, vol. 29, no. 23-24, str. 3451-3460.

LUNDER, Mojca, BRATKOVIČ, Tomaž, URLEB, Uroš, KREFT, Samo, ŠTRUKELJ, Borut. Ultrasound in phage display: a new approach to nonspecific elution. BioTechniques, 2008, vol. 44, no. 7, str. 893-900.

BUH GAŠPARIČ, Meti, CANKAR, Katarina, ŽEL, Jana, GRUDEN, Kristina. Comparision of different real-time PCR chemistries and their suitability for detection and quantification of genetically modified organisms. BMC Biotechnol, 2008, vol. 8, no. 26, str. 1-21.

DOLJAK, Bojan, OBERMAJER, Nataša, JAMNIK, Polona, KOS, Janko. Monoclonal antibody to cytokeratin VKIALEVEIATY sequence motif reduces plasminogen activation in breast tumour cells. Cancer lett.. [Print ed.], 2008, vol. 267, no. 1, str. 75-84.

KOČEVAR GLAVAČ, Nina, OBERMAJER, Nataša, KREFT, Samo. Membrane permeability of acylated cystatin depends on the fatty acyl chain length. Chem. biol. drug des. (Print), 2008, vol. 72, no. 3, str. 217-224.

OBERMAJER, Nataša, JEVNIKAR, Zala, DOLJAK, Bojan, KOS, Janko. Role of cysteine cathepsins in matrix degradation and cell signalling. Connect. tissue res. (Print), 2008, vol. 49, no. 3-4, str. 693-696.

INJAC, Rade, KARLJIKOVIĆ-RAJIĆ, Katarina, ŠTRUKELJ, Borut. SPE and large-volume sample stacking in MEKC for determination of doxycycline in biological fluids: Comparison of direct injection to SPE-MEKC. Electrophoresis, 2008, no. 21, vol. 29, str. 4431-4438.

INJAC, Rade, MLINARIČ, Aleš, DJORDJEVIĆ MILIĆ, Vukosava, KARLJIKOVIĆ-RAJIĆ, Katarina, ŠTRUKELJ, Borut. Optimal conditions for determination of zinc bacitracin, polymyxin B, oxytetracycline and sulfacetamide in animal feed by micellar electrokinetic capillary chromatography. Food addit. contam.. [Print ed.], 2008, no. 4, vol. 25, str. 424-431.

ŽEL, Jana, MAZZARA, Marco, SAVINI, Cristian, CORDEIL, Stephane, CAMLOH, Marjana, ŠTEBIH, Dejan, CANKAR, Katarina, GRUDEN, Kristina, MORISSET, Dany, VAN DEN ENDE, Guy. Method validation and quality management in the flexible scope of accreditation : an example of laboratories testing for genetically modified organisms. Food analytical methods, 2008, issue 2, vol. 1, str. 61-72.

INJAC, Rade, KARLJIKOVIC-RAJIC, Katarina, ŠTRUKELJ, Borut. Upotreba micelarne elektrokinetičke kapilarne hromatografije u rutinskoj analizi različitih uzoraka. Hem. ind., 2008, vol. 62, no. 3, str. 181-190.

INJAC, Rade, ĐORĐEVIĆ, Aleksandar, ŠTRUKELJ, Borut. Ispitivanje protektivnosti fulerenola C60(OH)24 in vivo u akutnoj kardiomiopatiji u doksorubicinskoj terapiji malignih neoplazmi kod pacova. Hem. ind., 2008, vol. 62, no. 3, str. 197-204.

OBERMAJER, Nataša, REPNIK, Urška, JEVNIKAR, Zala, TURK, Boris, KREFT, Marko, KOS, Janko. Cysteine protease cathepsin X modulates immune response via activation of [beta][sub]2 integrins. Immunology (Oxf.), 2008, vol. 124, no. 1, str. 76-88.

DECOCK, Julie, OBERMAJER, Nataša, VOZELJ, Suzana, HENDRICKX, Wouter, PARIDAENS, Robert, KOS, Janko. Cathepsin B, cathepsin H, cathepsin X and cystatin C in sera of patients with early-stage and inflammatory breast cancer. Int. j. biol. markers, 2008, vol. 23, no. 3, str. 161-168.

ANŽLOVAR, Sabina, KLADNIK, Aleš, KOGOVŠEK, Polona, NIKOLIĆ, Petra, GRUDEN, Kristina, BRZIN, Jože, DERMASTIA, Marina. The temporal and spatial expression of PR-5 linusitin-like gene in healthy and ethylene-treated flax plants. Int. j. plant sci., 2008, no. 6, vol. 169, str. 701-707.

BRATKOVIČ, Tomaž, LUNDER, Mojca, URLEB, Uroš, ŠTRUKELJ, Borut. Peptide inhibitors of MurD and MurE, essential enzymes of bacterial cell wall biosynthesis. J Basic Microbiol, 2008, vol. 48, no. 3, str. 202-206.

JEVNIKAR, Zala, OBERMAJER, Nataša, BOGYO, Matthew, KOS, Janko. The role of cathepsin X in the migration and invasiveness of T lymphocytes. J Cell Sci, 2008, issue 16, vol. 121, str. 2652-2661.

INJAC, Rade, SRDJENOVIĆ, Branislava, PRIJATELJ, Matevž, BOŠKOVIĆ, Marija, KARLJIKOVIĆ-RAJIĆ, Katarina, ŠTRUKELJ, Borut. Determination of caffeine and associated compounds in food, beverages, natural products, pharmaceuticals, and cosmetics by micellar electrokinetic capillary chromatography. J. chromatogr. sci., 2008, vol. 46, no. 2, str. 137-143.

GUTIERREZ-AGUIRRE, Ion, STEYER, Andrej, BOBEN, Jana, GRUDEN, Kristina, POLJŠAK-PRIJATELJ, Mateja, RAVNIKAR, Maja. Sensitive detection of multiple rotavirus genotypes with a single reverse transcription-real-time quantitative PCR assay. J. Clin. Microbiol., 2008, vol. 46, no. 8, str. 2547-2554.

OBERMAJER, Nataša, ŠVAJGER, Urban, BOGYO, Matthew, JERAS, Matjaž, KOS, Janko. Maturation of dendritic cells depends on proteolytic cleavage by cathepsin X. J. leukoc. biol., 2008, vol. 84, iss. 5, str. 1306-1315.

INJAC, Rade, ŠTRUKELJ, Borut, DJORDJEVIĆ MILIĆ, Vukosava, KARLJIKOVIĆ-RAJIĆ, Katarina, LINGEMAN, Henk. Densitometric determination of zinc bacitracin and nystatin in animal feed. J. Sci. Food Agric., 2008, vol. 88, no. 9, str. 1576-1581.

KOGOVŠEK, Polona, GOW, Lisa, POMPE NOVAK, Maruša, GRUDEN, Kristina, FOSTER, Gary D., BOONHAM, Neil, RAVNIKAR, Maja. Single-step RT real-time PCR for sensitive detection and discrimination of potato virus Y isolates. J. virol. methods. [Print ed.], 2008, vol. 149, no. 1, str. 1-11.

BERLEC, Aleš, TOMPA, Gorazd, SLAPAR, Nina, PEČAR FONOVIĆ, Urša, ROGELJ, Irena, ŠTRUKELJ, Borut. Optimization of fermentation conditions for the expression of sweet-tasting protein brazzein in Lactococcus lactis. Lett. appl. microbiol., 2008, vol. 46, no. 2, str. 227-231.

ŠKULJ, Mihaela, OKRŠLAR, Veronika, JALEN, Špela, JEVŠEVAR, Simona, SLANC, Petra, ŠTRUKELJ, Borut, MENART, Viktor. Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes. Microb Cell Fact, 2008, no. 6, vol. 7, str. 1-12.

MORISSET, Dany, DOBNIK, David, HAMELS, Sandrine, ŽEL, Jana, GRUDEN, Kristina. NAIMA: target amplification strategy allowing quantitative on-chip detection of GMOs. Nucleic acids res., 2008, issue 18, vol. 36, 11 str.

ROTTER, Ana, HREN, Matjaž, BAEBLER, Špela, BLEJEC, Andrej, GRUDEN, Kristina. Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing. Omics (Larchmt. N.Y.), 2008, vol. 12, no. 3, str. 171-182.

KRISTL, Jernej, SLANC, Petra, KRAŠNA, Metka, BERLEC, Aleš, JERAS, Matjaž, ŠTRUKELJ, Borut. Calcipotriol affects keratinocyte proliferation by decreasing expression of early growth response-1 and polo-like kinase-2. Pharm. res., 2008, vol. 25, no. 3, str. 521-529.

INJAC, Rade, BOŠKOVIĆ, Marija, PERŠE, Martina, KOPRIVEC FURLAN, Eva, CERAR, Anton, DJORDJEVIĆ, Aleksandar, ŠTRUKELJ, Borut. Acute doxorubicin nephrotoxicity in rats with malignant neoplasm can be successfully treated with fullerenol C60(OH)24 via suppression of oxidative stress. Pharmacol. Rep., 2008, vol. 60, str. 742-749.

MILAVEC, Mojca, GRUDEN, Kristina, RAVNIKAR, Maja, KOVAČ, Maja. Peroxidases in the early responses of different potato cultivars to infection by potato virus YNTN. Plant Pathol., 2008, issue 5, vol. 57, str. 861-869.

SREEDHARAN, Jemeen, BLAIR, Ian P., TRIPATHI, Vineeta B, ROGELJ, Boris. TDP-43 mutations in familial and sporadic amyotrophic lateral sclerosis. Science (Wash. D.C.), 2008, letn. 319, št. 5870, str. 1668-1672.

INJAC, Rade, PERŠE, Martina, BOŠKOVIĆ, Marija, DJORDJEVIĆ MILIĆ, Vukosava, DJORDJEVIĆ, Aleksandar, HVALA, Anastazija, CERAR, Anton, ŠTRUKELJ, Borut. Cardioprotective effects of fullerenol C60(OH)24 on a single dose doxorubicin-induced cardiotoxicity in rats with malignant neoplasm. Technology in cancer research and treatment, 2008, vol. 7, no. 1, str. 15-26.

INJAC, Rade, KAC, Javor, KARLJIKOVIĆ-RAJIĆ, Katarina, ŠTRUKELJ, Borut. Optimal conditions for extraction and simultaneous determination of sulfamethoxazole and trimethoprim in pharmaceuticals by micellar electrokinetic capillary chromatography. Yŕowů shípěin fäenxäi, 2008, vol. 16, no. 1, str. 18-25.

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2007

INJAC, Rade, KAC, Javor, KREFT, Samo, ŠTRUKELJ, Borut. Determination of doxycycline in pharmaceuticals and human urine by micellar electrokinetic capillary chromatography. Anal. bioanal. chem., 2007, no. 2, str. 695-701.

MULAOMEROVIĆ, Adaleta, HALIBAŠIĆ, Alma, ČIČKUŠIĆ, Elmir, ZAVAŠNIK-BERGANT, Tina, BEGIĆ, Lejla, KOS, Janko. Cystatin C as a potential marker for relapse in patients with non-Hodgkin B-cell lymphoma. Cancer lett.. [Print ed.], 2007, vol. 248, no. 2, str. 192-197

KOČEVAR GLAVAČ, Nina, OBERMAJER, Nataša, ŠTRUKELJ, Borut, KOS, Janko, KREFT, Samo. Improved acylation method enables efficient delivery of functional palmitoylated cystatin into epithelial cells. Chem. biol. drug des. (Print), 2007, vol. 69, no. 2, str. 124-131.

VOZELJ, Suzana, OBERMAJER, Nataša, KOS, Janko. Proteaze in njihovi inhibitorji v telesnih tekočinah kot diagnostični in prognostični tumorski kazalci = Proteases and their inhibitors in body fluids as diagnostic and prognostic tumour markers. Farm. vestn., 2007, letn. 58, št. 4, str. 133-138.

ŽIBERNA, Lovro, ŽIBERNA, Klemen, ŠTRUKELJ, Borut, MLINARIČ-RAŠČAN, Irena. Možnosti uporabe genskega dopinga in problemi njegove detekcije = An overview of gene doping applications and problems of its detection. Farm. vestn., 2007, letn. 58, št. 4, str. 139-144.

OBERMAJER, Nataša, KOCBEK, Petra, REPNIK, Urška, KUŽNIK, Alenka, CEGNAR, Mateja, KRISTL, Julijana, KOS, Janko. Immunonanoparticles - an effective tool to impair harmful proteolysis in invasive breast tumor cells. FEBS journal, 2007, vol. 274, no. 17, str. 4416-4427.

STROJAN, Primož, ANIČIN, Aleksandar, SVETIC, Branka, POHAR PERME, Maja, ŠMID, Alojz, KOS, Janko. Stefin a and stefin B : markers for prognosis in operable squamous cell carcinoma of the head and neck. Int. j. radiat. oncol. biol. phys.. [Print ed.], 2007, vol. 68, no. 5, str. 1335-1341.

ŽEL, Jana, GRUDEN, Kristina, CANKAR, Katarina, ŠTEBIH, Dejan, BLEJEC, Andrej. Calculation of measurement uncertainty in quantitative analysis of genetically modified organisms using intermediate precision - a practical approach. J. AOAC Int., 2007, letn. 90, št. 2, str. 582-586.

SABOTIČ, Jerica, TRČEK, Tatjana, POPOVIČ, Tatjana, BRZIN, Jože. Basidiomycetes harbour a hidden treasure of proteolytic diversity. J. biotechnol.. [Print ed.], 2007, vol. 128, no. 2, str. 297-307.

KOCBEK, Petra, OBERMAJER, Nataša, CEGNAR, Mateja, KOS, Janko, KRISTL, Julijana. Targeting cancer cells using PLGA nanoparticles surface modified with monoclonal antibody. J. control. release. [Print ed.], 2007, iss. 1-2, vol. 120, str. 18-26.

BERNE, Sabina, POHLEVEN, Jure, VIDIC, Iztok, REBOLJ, Katja, POHLEVEN, Franc, TURK, Tom, MAČEK, Peter, SONNENBERG, Anton, SEPČIĆ, Kristina. Ostreolysin enhances fruiting initiation in the oyster mushroom (Pleurotus ostreatus). Mycol. Res., 2007, vol. 111, str. 1431-1436.

JANEŠ, Damjan, KREFT, Samo, JURC, Maja, SEME, Katja, ŠTRUKELJ, Borut. Antibacterial activity in higher fungi (mushrooms) and endophytic fungi from Slovenia. Pharm. biol., 2007, vol. 45, no. 9, str. 700-706.

ROTTER, Ana, USADEL, Björn, BAEBLER, Špela, STITT, Mark, GRUDEN, Kristina. Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant methods, 2007, letn. 3, št. 10, str. [1-9].

DREO, Tanja, GRUDEN, Kristina, MANCEAU, Charles, JANSE, Jaap D., RAVNIKAR, Maja. Development of real-time PCR based method for detection of Xylophilus ampelinus. Plant Pathol., 2007, vol. 56, no. 1, str. 9-16.

HREN, Matjaž, BOBEN, Jana, ROTTER, Ana, KRALJ NOVAK, Petra, GRUDEN, Kristina, RAVNIKAR, Maja. Real-time PCR detection systems for Flavescence dorée and Bois noir phytoplasmas in grapevine : comparision with conventional PCR detection and application in diagnostics. Plant Pathol., 2007, vol. 56, str. 785-796.

SABOTIČ, Jerica, GALEŠA, Katja, POPOVIČ, Tatjana, LEONARDI, Adrijana, BRZIN, Jože. Comparison of natural and recombinant clitocypins, the fungal cysteine protease inhibitors. Protein expr. purif., 2007, vol. 53, no. 1, str. 104-111.

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2006

ŽEL, Jana, CANKAR, Katarina, RAVNIKAR, Maja, CAMLOH, Marjana, GRUDEN, Kristina. Accreditation of GMO detection laboratories: improving the reliability of GMO detection. Accredit. qual. assur., 2006, letn. 10, str. 531-536.

BERLEC, Aleš, JEVNIKAR, Zala, ČANŽEK MAJHENIČ, Andreja, ROGELJ, Irena, ŠTRUKELJ, Borut. Expression of the sweet-tasting plant protein brazzein in Escherichia coli and Lactococcus lactis: a path toward sweet lactic acid bacteria. Appl. microbiol. biotechnol., 2006, letn. 73, str. 158-165.

BRATKOVIČ, Tomaž, BERLEC, Aleš, POPOVIČ, Tatjana, LUNDER, Mojca, KREFT, Samo, URLEB, Uroš, ŠTRUKELJ, Borut. Engineered staphylococcal protein A's IgG-binding domain with cathepsin L inhibitory activity. Biochem. biophys. res. commun., 2006, vol. 349, no. 1, str. 441-445.

SABOTIČ, Jerica, GASER, Dominik, ROGELJ, Boris, GRUDEN, Kristina, ŠTRUKELJ, Borut, BRZIN, Jože. Heterogeneity in the cysteine protease inhibitor clitocypin gene family. Biol Chem, 2006, vol. 387, str. 1559-1566.

CANKAR, Katarina, ŠTEBIH, Dejan, DREO, Tanja, ŽEL, Jana, GRUDEN, Kristina. Critical points of DNA quantification by real-time PCR-effects of DNA extraction method and sample matrix on quantification of genetically modified organisms. BMC Biotechnol, 2006, vol. 6, no. 37.

PAŠKULIN, Roman, JAMNIK, Polona, ŽIVIN, Marko, RASPOR, Peter, ŠTRUKELJ, Borut. Ibogaine affects brain energy metabolism. Eur. J. Pharmacol.. [Print ed.], 2006, vol. 552, str. 11-14.

OBERMAJER, Nataša, PREMZL, Aleš, ZAVAŠNIK-BERGANT, Tina, TURK, Boris, KOS, Janko. Carboxypeptidase cathepsin X mediates ß2 - integrin dependent adhesion of differentiated U-937 cells. Exp. cell res., 2006, vol. 312, str. 2515-2527.

OBERMAJER, Nataša, DOLJAK, Bojan, KOS, Janko. Cysteine cathepsins: regulators of antitumour immune response. Expert opin. biol. ther., 2006, vol. 6, no. 12, str. 1295-1309.

SLANC, Petra, BRUS, Sanja, ŠTRUKELJ, Borut. Kvalitativna analiza rastlinskih vrst v zdravilnih čajnih mešanicah na osnovi restrikcijske analize ITS-regij = Qualitative analysis of individual herbal drugs in tea mixtures using restriction analysis of ITS regions. Farm. vestn., 2006, let. 57, št. 4, str. 274-278.

CANKAR, Katarina, VAN DIJK, J.E., GRUDEN, Kristina, BLEJEC, Andrej, MCNICOLL, Jim, KOK, Esther. Pristop k podatkovni analizi genskih mikromrež na področju varnosti hrane = An approach to the analysis of DNA microarray data and its use in food safety. Informatica medica slovenica, 2006, letn. 11, št. 1, str. 34-39.

KRALJ NOVAK, Petra, ROTTER, Ana, TOPLAK, Nataša, GRUDEN, Kristina, LAVRAČ, Nada, GARRIGA, Gemma C. Application of closed itemset mining for class labeled data in functional genomics. Informatica medica slovenica, 2006, letn. 11, št. 1, str. 40-45.

ANŽLOVAR, Sabina, GRUDEN, Kristina, ROGELJ, Boris, ŠTRUKELJ, Borut, DERMASTIA, Marina. Molecular characterization of the linusitin-like gene family from flax. Int. j. plant sci., 2006, no. 2, vol. 167, str. 231-238.

PREMZL, Aleš, TURK, Vito, KOS, Janko. Intracellular proteolytic activity of cathepsin B is associated with capillary-like tube formation by endothelial cells in vitro. J Cell Biochem, 2006, vol. 97, str. 1230-1240.

CEGNAR, Mateja, KOS, Janko, KRISTL, Julijana. Intracellular delivery of cysteine protease inhibitor cystatin by polymeric nanoparticles. J. nanosci. nanotechnol. (Print), 2006, vol. 6, no. 9/10, str. 3087-3094.

WERLE, Bernd, SCHANZENBACHER, U..., LAH TURNŠEK, Tamara, EBERT, E..., JULKE, B..., EBERT, W..., FIEHN, Walter, KAYSER, Klaus, SPIESS, E..., ABRAHAMSON, Magnus, KOS, Janko. Cystatins in non-small cell lung cancer: tissue levels, localization and relation to prognosis. Oncol. Rep., 2006, vol. 16, no. 4, str. 647-655.

SLANC, Petra, RAVNIKAR, Matjaž, ŠTRUKELJ, Borut. Identification of individual herbal drugs in tea mixtures using restriction analysis of ITS DNA and real-time PCR. Pharmazie, 2006, vol. 61, no. 11, str. 912-915.

POMPE NOVAK, Maruša, GRUDEN, Kristina, BAEBLER, Špela, KREČIČ STRES, Hana, KOVAČ, Maja, JONGSMA, Maarten Anthonie, RAVNIKAR, Maja. Potato virus Y induced changes in the gene expression of potato (Solanum tuberosum L.). Physiol. mol. plant pathol., 2006, vol. 67, str. 237-247.

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Patents:

JONGSMA, Maarten Anthonie, ŠTRUKELJ, Borut, LENARČIČ, Brigita, GRUDEN, Kristina, TURK, Vito, BOSCH, Hendrik J., STIEKEMA, Willem J. Johannes. Method for plant protection against insects or nematodes by transformations with a nucleic acid encoding equistatin : Patent number: WO98/58068 : United States Patent 6,681,578. [S.l.: s.n.], March 1, 2005. 80 str.

KOS, Janko, PREMZL, Aleš, KOPITAR-JERALA, Nataša, FAN, Xiao-hui, TURK, Vito, BESTAGNO, Marco, BURRONE, Oscar. Monoclonal antibody neutralising cathepsin b activity and uses thereof : [United States Patent Application]: WO 20050260207 A1. Washington [s.n.], November 24, 2005. 12 str

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